In the previous post on the first army list, an image was posted showing the list for the Royal Regiment of Foot. As colonel is listed the Earl of Dumbarton, who, of course was colonel of the regiment until 1688. There is, however, a little caveat. Since Dumbarton was Roman Catholic, he could not subscribe to the Test Act of 1678. Henceforth, he was officially removed from his colonelcy. The vacancy was not filled however. He was only restored to his position in November 1685 by James II.
Dalton, in English Army Lists and Commission Regiments, explicitly mentions this and shows the position of colonel as being vacant. In this Nathan Brooks' Army List, he is mentioned as colonel without any further remark. Perhaps his removal as colonel was not commonly known at that time?